PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112506.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 543aa    MW: 58906.7 Da    PI: 7.0175
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112506.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-19154240186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  XP_010112506.1 154 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAAVVseRCERQTKSVEQCKNKVDNLKKRYKLERHRMNNG-GISASHWPWFKKME 240
                     5*************************************665667789**********************9999.566679*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-21152242No hitNo description
Gene3DG3DSA:3.40.1160.105.8E-68283523IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.794294533IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.93E-54294524IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.16E-116297524No hitNo description
PfamPF006964.5E-24298508IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MASCDDDFSL LGDDSSSNHN HNHNHHLDQT YTPAPPLHRF ASGRAANVHA PPPPNQPILN  60
AAASSPEKVG PGEDQGDGED YGEAAAAAAF CSNPFDNDGD QNGVVDARSE KRKDHREDLS  120
DGGGGRSGSP YGSYKKSKPS SGSGGGEYRK DREEWSDAAI SCLLDAYTEK FTQLNRGNLR  180
GRDWEEVAAV VSERCERQTK SVEQCKNKVD NLKKRYKLER HRMNNGGISA SHWPWFKKME  240
QIVGNSLPIK VASDEDKGAG SSGNTPRQSK RYATTTASSA GQMNNMKPKS ITAPKWRRVV  300
FKISGAALSG AAPNNIDSKV VMLIAREVAI ASRVGMEVAI VVGGRNFFCG DTWVNSTGLD  360
RTTAYQIGMM ATVMNSVLLQ SAIEKMGVQT RVQTAFSMHE VAEPYSRQRA IRHLEKGRVV  420
IFAGIGAGTG NPLFSTDTAA ALRALEIHAE AVVKGTNVDG VYDCTSQDSN FTFEHISFRD  480
LAARGATLMD SMALTFCEEN RIPVVVFNLL EPGNISKALC GEQVDVEVFT RLTFSSALQF  540
SRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5726653030281Uridylate kinase
3nwy_B2e-5726653030281Uridylate kinase
3nwy_C2e-5726653030281Uridylate kinase
3nwy_D2e-5726653030281Uridylate kinase
3nwy_E2e-5726653030281Uridylate kinase
3nwy_F2e-5726653030281Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112506.10.0Uridylate kinase
TrEMBLW9SIW10.0W9SIW1_9R
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein